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Table 2 Network model simplification criteria

From: Fanconi anemia cells with unrepaired DNA damage activate components of the checkpoint recovery process

Node in the Nodes in the Simplification criteria  
original BNM simplified BNM   
ICL ICL Unchanged node  
FANCM, FAcore FAcore ICL recognition proteins working  
   together in the upstream FA/BRCA  
   pathway  
FANCD2I FANCD2I Unchanged node  
MUS81 NUC1 Nuclease mediated  
   ICL incision  
XPF, FAN1 NUC2 Nuclease mediated  
   ICL incision  
ADD ADD Unchanged node  
DSB DSB Unchanged node  
ATR, CHK1, H2AX ATR These proteins act in the  
   Checkpoint pathway  
ATM, CHK2, H2AX ATM These proteins act in the  
   Checkpoint pathway  
p53 p53 Unchanged node  
PCNATLS TLS This is only a change in name  
FANCJMLH1, MRN, BRCA1, FAHRR These proteins act in the  
FANCD1N, RAD51, HRR,   Homologous Recombination  
ssDNARPA   Repair pathway  
—— HRR2 New node representing the  
   alternative Homologous  
   Recombination Repair Pathway  
KU, DNAPK, NHEJ NHEJ These proteins act in the  
   Non-Homologous End-Joining  
   DNA repair pathway  
USP1, CHKREC CHKREC Global negative regulators  
   of the FA/BRCA pathway